Index

A

avg_shape() (in module cajal.utilities)

avg_shape_spt() (in module cajal.utilities)

B

batch_filter_and_preprocess() (in module cajal.swc)

C

cajal.combined_slb_qgw module cajal.qgw module cajal.run_gw.DistanceMatrix (class in src.cajal.run_gw) cajal.run_gw.Distribution (class in src.cajal.run_gw) cajal.sample_mesh.FaceArray (class in src.cajal.sample_mesh) cajal.sample_mesh.VertexArray (class in src.cajal.sample_mesh) cajal.sample_seg module cajal.swc.SWCForest (built-in class)

cell_boundaries() (in module cajal.sample_seg) cell_iterator() (in module cajal.swc) cell_iterator_csv() (in module cajal.run_gw) cell_pair_iterator_csv() (in module cajal.run_gw) combined_slb_quantized_gw() (in module cajal.combined_slb_qgw) combined_slb_quantized_gw_memory() (in module cajal.combined_slb_qgw) compute_gw_distance_matrix() (in module cajal.run_gw) compute_icdm_all() (in module cajal.sample_mesh) (in module cajal.sample_seg) compute_icdm_all_euclidean() (in module cajal.sample_swc) compute_icdm_all_geodesic() (in module cajal.sample_swc)

D

default_name_validate() (in module cajal.swc)

discrete_depth() (in module cajal.swc)

F

forest_from_linear() (in module cajal.swc)

G

geodesic_distance() (in module cajal.sample_swc) get_filenames() (in module cajal.swc)

get_sample_pts_euclidean() (in module cajal.sample_swc) get_sample_pts_geodesic() (in module cajal.sample_swc) gw_pairwise_parallel() (in module cajal.run_gw)

I

icdm_csv_validate() (in module cajal.run_gw)

icdm_euclidean() (in module cajal.sample_swc) icdm_geodesic() (in module cajal.sample_swc)

K

keep_only_eu() (in module cajal.swc)

L

laplacian_scores() (in module cajal.laplacian_score) leiden_clustering() (in module cajal.utilities)

linearize() (in module cajal.swc) louvain_clustering() (in module cajal.utilities)

M

Modality (class in cajal.wnn) module cajal.combined_slb_qgw cajal.qgw cajal.sample_seg src.cajal.run_gw src.cajal.sample_mesh

N

NeuronNode (class in cajal.swc) NeuronTree (class in cajal.swc)

node_type_counts_forest() (in module cajal.swc) node_type_counts_tree() (in module cajal.swc) num_nodes() (in module cajal.swc)

P

preprocessor_eu() (in module cajal.swc)

preprocessor_geo() (in module cajal.swc)

Q

quantized_gw_parallel() (in module cajal.qgw)

quantized_icdm (class in cajal.qgw)

R

read_obj() (in module cajal.sample_mesh)

read_preprocess_save() (in module cajal.swc) read_swc() (in module cajal.swc)

S

slb_parallel() (in module cajal.qgw) slb_parallel_memory() (in module cajal.qgw) src.cajal.run_gw module

src.cajal.sample_mesh module

T

ternary_distance_clusters() (in module cajal.ternary)

total_length() (in module cajal.swc)

W

weighted_depth() (in module cajal.swc) WeightedTree_of() (in module cajal.weighted_tree) WeightedTreeChild (class in cajal.weighted_tree)

WeightedTreeRoot (class in cajal.weighted_tree) wnn() (in module cajal.wnn) write_swc() (in module cajal.swc)