stable

Overview and Walkthrough

What is CAJAL?
Computing Intracellular Distance Matrices
Computing GW Distances
Inferring Associations with Cell Morphology
Computing Average Cell Shapes

TUTORIALS

Tutorial 1: Predicting the Molecular Type of Neurons
Tutorial 2: Genetic Determinants of Neuronal Morphology
Tutorial 3: Computing Morphological Distances in Very Large Datasets
Tutorial 4: Integration and Analysis of Multimodal Data

API

Processing SWC Files
Sampling from SWC Files
Processing Obj Meshes
Sampling from Segmented Images
Running Gromov-Wasserstein
Second Lower Bound and Quantized Gromov-Wasserstein
Combined SLB and Quantized GW Nearest Neighbors Algorithm
Laplacian Score
Average Cell Shapes
Clustering
Ternary Plots
Weighted Nearest Neighbors

cajal

Python Module Index

Python Module Index

c | s


	c
	`cajal`
	`cajal.combined_slb_qgw`
	`cajal.qgw`
	`cajal.sample_seg`

	s
	`src`
	`src.cajal.run_gw`
	`src.cajal.sample_mesh`

© Copyright 2022, Pablo Cámara. Revision 133cffc0.

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