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Overview and Walkthrough

  • What is CAJAL?
  • Computing Intracellular Distance Matrices
  • Computing GW Distances
  • Inferring Associations with Cell Morphology
  • Computing Average Cell Shapes
  • Variants of Gromov-Wasserstein
  • Analysis of Subcellular Organization

TUTORIALS

  • Tutorial 1: Predicting the Molecular Type of Neurons
  • Tutorial 2: Genetic Determinants of Neuronal Morphology
  • Tutorial 3: Computing Morphological Distances in Large Datasets
  • Tutorial 4: Integration and Analysis of Multimodal Data
  • Tutorial 5: Unbalanced and Fused Morphological distances
  • Tutorial 6: Morphology-Aware Analysis of Subcellular Protein Localization (CellAligner)
  • Tutorial 7: Morphology-Aware Analysis of Subcellular Protein Localization in Large Datasets (dCellAligner-OT)

API

  • Processing SWC Files
  • Sampling from SWC Files
  • Processing Obj Meshes
  • Sampling from Segmented Images
  • Running Gromov-Wasserstein
  • Second Lower Bound and Quantized Gromov-Wasserstein
  • Combined SLB and Quantized GW Nearest Neighbors Algorithm
  • Laplacian Score
  • Average Cell Shapes
  • Clustering
  • Unbalanced Gromov-Wasserstein module
  • Fused Gromov-Wasserstein Module
  • Ternary Plots
  • Weighted Nearest Neighbors
  • Subcellular Protein Localization
  • Subcellular Protein Localization (Deep Learning)
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© Copyright 2022, Pablo Cámara.

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