cajal
stable
Overview and Walkthrough
What is CAJAL?
Computing Intracellular Distance Matrices
Computing GW Distances
Inferring Associations with Cell Morphology
Computing Average Cell Shapes
Tutorial 1: Predicting the Molecular Type of Neurons
Tutorial 2: Genetic Determinants of Neuronal Morphology
Tutorial 3: Computing Morphological Distances in Large Datasets
API
Processing SWC Files
Sampling from SWC Files
Processing Obj Meshes
Sampling from Segmented Images
Running Gromov-Wasserstein
Second Lower Bound and Quantized Gromov-Wasserstein
Laplacian Score
Average Cell Shapes
Clustering
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